Author

Kalani Ratnasiri

Stanford MedicineORCID 0000-0001-5953-0004Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Catherine A. BlishiD· 2 shared Abul Kasham ShoabiD· 1 shared Afsana YeaminiD· 1 shared Alina Choi· 1 shared Anna NguyeniD· 1 shared Ayşe ErcümeniD· 1 shared Brian S. FinliniD· 1 shared Brooke M. Leeman· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Catherine A. BlishORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 4, 2025

scMetaIntegrator: a meta-analysis approach to paired single-cell differential expression analysis

Kalani Ratnasiri, Sara N. Mach, Catherine A. Blish, Purvesh Khatri

scMetaIntegrator provides a meta-analysis approach for paired scRNA-seq data, improving robustness and reducing false positives by accounting for biological replicates and cell variability.

DOI 10.1101/2025.06.04.657898

scRNA-seqstatistical model

𝕏 PostBluesky

MicrobiologyApplied and Environmental MicrobiologyPeer-reviewedMay 27, 2025

Pathogens and Antimicrobial Resistance Genes in Household Environments: A Study of Soil Floors and Cow Dung in Rural Bangladesh

Anna Nguyen, Kalani Ratnasiri, Gabriella Barratt Heitmann…·Jade Benjamin‐Chung

The paper investigates the presence of pathogens and antimicrobial resistance genes in soil floors and cow dung from rural Bangladeshi households, finding shared and distinct microbial communities and resistance profiles.

10 citations

metagenomicsstatistical model

𝕏 PostBluesky

ImmunologybioRxivPreprintMay 23, 2025

COVID-19 induces persistent transcriptional changes in adipose tissue that are not associated with Long COVID

Soneida DeLine-Caballero, Kalani Ratnasiri, Richard Chen…·Catherine A. Blish

The paper examines transcriptional changes in adipose tissue from subacute COVID-19 and Long COVID patients, finding no persistent viral RNA but significant transcriptional remodeling in subacute cases and no consistent gene expression differences in Long COVID.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky