Author

Chunxu Gao

The University of Texas MD Anderson Cancer CenterORCID 0000-0001-6017-2611Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Chi Yin ChingiD· 1 shared Christopher P. LyiD· 1 shared Leah L. WeberiD· 1 shared Peter Van LooiD· 1 shared Yidan PaniD· 1 shared Yixiao ChengiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Chi Yin ChingORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 28, 2026

Arborist: Prioritizing Bulk DNA Inferred Tumor Phylogenies via Low-pass Single-cell DNA Sequencing Data

Leah L. Weber, Chi Yin Ching, Christopher P. Ly…·Peter Van Loo

Arborist improves tumor phylogeny reconstruction by integrating bulk DNA-seq and low-pass scDNA-seq data, outperforming existing methods on simulated and biological datasets.

DOI 10.64898/2026.02.26.707773

humanbulk RNA-seq

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