Author

Patroklos Samaras

Technical University of MunichORCID 0000-0001-6042-1585Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Research Focus:database / resource· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Mathias WilhelmiD· 3 shared Bernhard KüsteriD· 2 shared Eric W. DeutschiD· 2 shared Tobias SchmidtiD· 2 shared Yasset Pérez‐RiveroliD· 2 shared Alexander HogrebeiD· 1 shared Alvis BrāzmaiD· 1 shared Anja FüllgrabeiD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Mathias WilhelmORCID

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3 papers

Recent·Most cited

BiochemistryNature MethodsPeer-reviewedApr 22, 2025

Unifying the analysis of bottom-up proteomics data with CHIMERYS

Martin Frejno, Michelle T. Berger, Johanna Tüshaus…·Mathias Wilhelm

CHIMERYS deconvolves chimeric spectra in proteomic data, enabling unified analysis across DDA, DIA, and PRM experiments by accurately identifying and quantifying multiple peptides per spectrum.

46 citationstop 1%

proteomicsdeep learning

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BioinformaticsNature CommunicationsPeer-reviewedOct 6, 2021

A proteomics sample metadata representation for multiomics integration, and big data analysis.

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer…·Yasset Pérez‐Riverol

The paper introduces a standardized metadata format for proteomics datasets to improve reusability and integration across public repositories.

125 citations

proteomicsstatistical model

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BioinformaticsJournal of Proteome ResearchPeer-reviewedMay 10, 2021

Universal Spectrum Explorer: A standalone (web-)application for cross-resource spectrum comparison

Tobias Schmidt, Patroklos Samaras, Viktoria Dorfer…·Mathias Wilhelm

The paper introduces a web-based tool for cross-resource peptide spectrum comparison and visualization, with a focus on integration and retrieval from spectral databases.

42 citations

proteomicsexperimental assay

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