Author

Kimberly S. Butler

Sandia National LaboratoriesORCID 0000-0001-6045-8636Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:perturbation response prediction· 1 Assay:proteomics· 1

Frequent Co-Authors

Raga KrishnakumariD· 2 shared Anjali Iyer· 1 shared Arjun Subedi· 1 shared Matthew P. HirakawaiD· 1 shared Nikki TjahjonoiD· 1 shared Prem Chintalapudi· 1 shared Steven S. BrandaiD· 1 shared Yooli Kim LightiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Raga KrishnakumarORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 27, 2026

Benchmarking Large Language Models for Transcriptomic Data Analysis and Visualization: Multi-Model Workflow Evaluation

Anjali Iyer, Arjun Subedi, Kimberly S. Butler, Raga Krishnakumar

This study benchmarks large language models for automated transcriptomic data analysis and visualization workflows, finding that prompt specificity improves code quality but performance varies with preprocessing and environment.

DOI 10.64898/2026.10.22.761023

humanbulk RNA-seq

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Molecular BiologybioRxivPreprintOct 14, 2020

Augmentation of Antibacterial Activity in Mesenchymal Stromal Cells Through Systems-Level Analysis and CRISPR-mediated Activation of CD14

Matthew P. Hirakawa, Nikki Tjahjono, Yooli Kim Light…·Raga Krishnakumar

This study identifies CD14 as a key target to enhance antibacterial activity in mesenchymal stromal cells through systems-level analysis and CRISPR activation.

3 citations

humanbulk RNA-seq

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