Author

Robert M. Gutgesell

Helmholtz MunichORCID 0000-0001-6137-0468Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Organism:human· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Assay:snRNA-seq· 1

Frequent Co-Authors

Alejandro Tejada-LapuertaiD· 1 shared Anna Christina SchaariD· 1 shared Fabian Joachim TheisiD· 1 shared Francesca DrummeriD· 1 shared Giovanni PallaiD· 1 shared Larsen VornholziD· 1 shared Leander DonyiD· 1 shared Lennard HalleiD· 1 shared

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2024-2024 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Alejandro Tejada-LapuertaORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintApr 15, 2024

✦ In-depth digest

Nicheformer: a foundation model for single-cell and spatial omics

Anna Christina Schaar, Alejandro Tejada-Lapuerta, Giovanni Palla…·Fabian Joachim Theis

Pretrained on 57 million dissociated and 53 million spatial human and mouse cells, a 49.3M-parameter transformer predicts niche, region, neighborhood composition and density, and carries spatial labels onto scRNA-seq.

66 citations

humanmouse

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