Author
Helmholtz MunichORCID 0009-0002-7156-9125Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Francesca Drummer, Sara Jiménez, Federico Di Marco…·Fabian Joachim Theis
InterScale models both local and global cellular interactions in spatial transcriptomics data, revealing spatially restricted differentiation programs and disease-associated tissue remodeling.
Francesca Drummer, Nadia Dorosti, Charlene-Annett Hurler…·Sarah Jäkel
The paper identifies region- and disease-specific transcriptomic changes in oligodendrocytes from Alzheimer's disease patients using single-nucleus RNA sequencing.
Sergio Marco Salas, Michael Dammann, Raphael Kfuri‐Rubens…·Fabian Joachim Theis
The paper analyzes unassigned RNAs in spatial transcriptomics data, identifies biological relevance, and introduces a tool for their study.
Anna Christina Schaar, Alejandro Tejada-Lapuerta, Giovanni Palla…·Fabian Joachim Theis
Pretrained on 57 million dissociated and 53 million spatial human and mouse cells, a 49.3M-parameter transformer predicts niche, region, neighborhood composition and density, and carries spatial labels onto scRNA-seq.