Author

Sofie Goormachtig

Ghent UniversityORCID 0000-0001-6195-9889Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Plant Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1

Frequent Co-Authors

Alexander BotzkiiD· 1 shared Alison Horne· 1 shared Annick De KeyseriD· 1 shared Bert De RybeliD· 1 shared Bunlong YimiD· 1 shared Caroline MarconiD· 1 shared Chloee M. McLaughliniD· 1 shared Danning WangiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperSystems Biology

Alexander BotzkiORCID

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3 papers

Recent·Most cited

Plant BiologyCurrent BiologyPeer-reviewedJun 19, 2026

Decoding stage-specific symbiotic programs in the Rhizophagus irregularis-tomato interaction using single-nucleus transcriptomics

Naomi Stuer, Toon Leroy, Thomas Eekhout…·Sofie Goormachtig

This study uses single-nucleus transcriptomics to identify stage-specific transcriptional programs in tomato roots colonized by Rhizophagus irregularis, revealing key regulatory factors and cellular responses during arbuscular mycorrhizal symbiosis.

2 citationstop 3%

plant (other)snRNA-seq

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GeneticsNature PlantsPeer-reviewedMar 21, 2024

Heritable microbiome variation is correlated with source environment in locally adapted maize varieties

Xiaoming He, Danning Wang, Yong Jiang…·Peng Yu

The paper investigates how host genotype and source environment influence the microbiome of maize, finding genetic variants linked to microbiome composition and environmental adaptation.

151 citationstop 1%

plant (other)metagenomics

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Systems BiologyThe Plant JournalPeer-reviewedApr 20, 2019

The Plant PTM Viewer, a central resource exploring plant protein modifications. From site-seeing to protein function.

Patrick Willems, Alison Horne, Thomas Van Parys…·Kris Gevaert

The paper introduces the Plant PTM Viewer, a database integrating over 200,000 PTM sites across five plant species to explore protein modifications and their functional implications.

134 citationstop 1%

plant (other)proteomics

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