This study shows that distinct temporal host transcriptional responses to two Xanthomonas translucens strains influence bacterial leaf streak development in triticale.

DOI 10.64898/2026.09.07.749878

bulk RNA-seqstatistical model

𝕏 PostBluesky

Plant BiologybioRxivPreprintOct 31, 2025

A subset of world barley collection was used in the identification of sources of resistance and marker-trait association for resistance for bacterial leaf streak

Diel Donne P Velasco, Gongjun Shi, Robert Saxon Brueggeman…·Zhaohui Liu

The study identifies resistant barley accessions and marker-trait associations for bacterial leaf streak resistance using a subset of the World Barley Core Collection.

DOI 10.1101/2025.10.31.685662

statistical modelgene regulatory network inference

𝕏 PostBluesky

GeneticsbioRxivPreprintJan 24, 2024

Evolution, diversity, function, and marker-based elimination of the disease susceptibility gene Snn1 in wheat

Sudeshi Seneviratne, Gongjun Shi, Ágnes Szabó-Hevér…·Justin D. Faris

The paper identifies mutations in Snn1 genes that affect susceptibility to Septoria nodorum blotch and develops markers to eliminate these genes for improved wheat resistance.

1 citation

statistical modelvariant calling

𝕏 PostBluesky

GenomicsMicrobial GenomicsPeer-reviewedOct 10, 2022

A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology

Paula Moolhuijzen, Pao Theen See, Gongjun Shi…·Caroline S. Moffat

This paper constructs a pangenome for Pyrenophora tritici-repentis and identifies structural homology in effector proteins, revealing genetic variations linked to pathogenicity.

26 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky