Mohammad Ali Abbasi

The paper compares differential expression and co-expression network analysis for microglia transcriptomics, finding co-expression analysis better identifies functional ontologies.

This paper introduces a GPU-accelerated framework for processing 3D multiplexed RNA-FISH data, quantifies information loss from axial sampling, and improves post-mortem sample quality.

The paper introduces sparse representation learning to derive biological features from the Allen Mouse Brain Atlas, preserving gene weights and improving interpretability.