Haja N. Kadarmideen

GEDI integrates transcriptomic data from microarray and NGS platforms by removing batch effects and re-annotating data, verified through PCA and logistic regression.

GeneDMRs is an R package that identifies gene-based differentially methylated regions using NGS methylome data, applied to mouse RRBS data to uncover novel biological insights.

The paper identifies eQTLs in Danish pigs linked to feed efficiency, revealing trans-eQTLs associated with gene regulation and expression pathways.

The paper integrates metabolomic and transcriptomic data from pigs to identify gene-metabolite interactions linked to feed efficiency, revealing pathways and novel associations.

The paper identifies mitochondrial gene networks associated with feed efficiency in pigs through transcriptomic analysis and pathway enrichment.

The study identifies differentially expressed genes in endometrial samples of dairy cows that became pregnant after in-vitro produced embryo transfer, linking them to biological processes like extracellular matrix interaction and inflammation.

This study identifies genetic variants and metabolite interactions associated with feed efficiency in pigs using mGWAS and network analysis.