cpiVAE: Robust and Interpretable Cross-Platform Proteomics Imputation
Yuxiang Li, ThuyVy Duong, Mary R. Rooney, Christie Mitchell Ballantyne, Josef Coresh, Jennifer A. Brody, Nona Sotoodehnia, Dan E. Arking, Joel S. Bader
cpiVAE improves cross-platform proteomics imputation between Olink and SomaScan, achieving higher correlation than KNN and WNN, and enabling better phenotype associations.
bioRxiv · Nov 20, 2025 · PreprintBioinformatics