Author

Marzyeh Ghassemi

University of TorontoORCID 0000-0001-6349-7251Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:contrastive learning· 1 Research Focus:differential expression· 1 Organism:mouse· 1 Assay:protein sequence· 1 Approach:statistical model· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Abhishek NiroulaiD· 1 shared Alan M MosesiD· 1 shared Alba Ferrer-PéreziD· 1 shared Alexander G. BickiD· 1 shared Amy X. LuiD· 1 shared Benjamin L. EbertiD· 1 shared Christie Mitchell BallantyneiD· 1 shared Christopher James GibsoniD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenetic & Genomic Medicine

Abhishek NiroulaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Genetic & Genomic MedicinemedRxivPreprintAug 22, 2021

TP53-mediated clonal hematopoiesis confers increased risk for incident peripheral artery disease

Seyedeh Maryam Zekavat, Vanesa Viana‐Huete, Saman Doroodgar Jorshery…·Derek M. Klarin

This study shows that clonal hematopoiesis, especially with DDR gene mutations, increases the risk of peripheral artery disease and atherosclerosis.

8 citations

mousewhole-exome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 4, 2020

Self-Supervised Contrastive Learning of Protein Representations By Mutual Information Maximization

Amy X. Lu, Haoran Zhang, Marzyeh Ghassemi, Alan M Moses

CPCProt pretrains protein embeddings by telling a protein's own next fragment from fragments of random proteins, reportedly matching benchmarked self-supervised models with 2-10% of their parameters.

71 citations

protein sequencecontrastive learning

𝕏 PostBluesky