Jitender S. Deogun

The paper optimizes an assembly-free algorithm for bacterial ST mapping and integrates it into a scalable platform for genomic epidemiology.

The paper introduces ConSemble, a consensus-based ensemble method for transcriptome assembly that improves accuracy by combining multiple assemblers, outperforming individual methods in both de novo and genome-guided scenarios.

ProkEvo is a scalable framework for bacterial population genomics that automates analyses of WGS data and generates population-based genotypes and annotations.

STAG-CNS identifies short conserved non-coding sequences across multiple species by integrating promoter data, revealing their association with transcriptional regulation and expression context.