Author

Dmitry Repchevsky

Barcelona Supercomputing CenterORCID 0000-0001-6415-0532Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 2 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

José M. FernándeziD· 2 shared Josep Lluis GelpíiD· 2 shared Salvador Capella-GutiérreziD· 2 shared Adam FrankishiD· 1 shared Alejandro PaniaguaiD· 1 shared Alessandra Martinez-Martin· 1 shared Alfonso ValenciaiD· 1 shared Ali MortazaviiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

José M. FernándezORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GenomicsNature MethodsPeer-reviewedJun 7, 2024

✦ In-depth digest

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese…·Angela Norie Brooks

Benchmarking six long-read RNA-seq protocol-platform combinations and 14 tools across human, mouse, and manatee shows read length and accuracy drive isoform detection, depth drives quantification.

235 citationstop 1%

humanmouse

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 9, 2019

MuGVRE. A virtual research environment for 3D/4D genomics

Laia Codó, Genís Bayarri, J. Álvarez Cid-Fuentes…·Josep Lluis Gelpí

MuGVRE provides a cloud-based infrastructure for 3D/4D genomics analysis, supporting both high-computational and high-throughput applications.

2 citations

experimental assay

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BioinformaticsbioRxivPreprintAug 31, 2017

Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking

Salvador Capella-Gutiérrez, Diana de la Iglesia, Juergen Haas…·Alfonso Valencia

This paper describes OpenEBench, a continuous automated benchmarking system for bioinformatics methods, tools, and web services to improve reproducibility and interoperability.

40 citations

benchmark studybenchmarking

𝕏 PostBluesky