Author

Juergen Haas

SIB Swiss Institute of BioinformaticsORCID 0000-0002-3255-7773Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:Drosophila· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Christine Anne OrengoiD· 2 shared Ian SillitoeiD· 2 shared Sameer S VelankariD· 2 shared Torsten F. SchwedeiD· 2 shared Alan James BridgeiD· 1 shared Alex G. BatemaniD· 1 shared Alfonso ValenciaiD· 1 shared Ana RathiD· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Christine Anne OrengoORCID

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Author profile →

4 papers

Recent·Most cited

ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models

Brinda Kizhakke Vallat, Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek, Wei Hui Zheng, Ezra Peisach, Dennis W. Piehl, Ivan Anischanka, Ian Sillitoe, James L. Tolchard, Mihály Váradi, David A. Baker, Christine Anne Orengo, , John Westbrook

ModelCIF extends the PDBx/mmCIF standard to represent predicted 3D protein models, enabling FAIR data sharing for computational structural biology.

Journal of Molecular Biology · Feb 22, 2023Peer-reviewedBioinformatics

The remarkable complexity of the brain microbiome in health and disease

Xinyue Hu, Chris-Anne McKenzie, Colin Smith, Juergen Haas, Richard Lathe

This paper identifies diverse brain microbes in health and disease, finding over-represented pathogens in Alzheimer's brain samples.

bioRxiv · Feb 6, 2023 · PreprintNeuroscience

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

Rachel A Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Juergen Haas, Jerry Lanfear, Rodrigo López, Nicole Redaschi, Heinz Stockinger C, Daniel Teixeira, Aravind Venkatesan, Elixir Core Data Resource Forum, , Johanna McEntyre

The paper assesses the value and sustainability of ELIXIR Core Data Resources, showing their critical role in preserving biological data and highlighting funding challenges.

Bioinformatics · Jan 7, 2020Peer-reviewedBioinformatics

Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking

Salvador Capella-Gutiérrez, Diana de la Iglesia, Juergen Haas, Anália Maria Garcia Lourenço, José M. Fernández, Dmitry Repchevsky, Christophe Dessimoz, Torsten F. Schwede, Cédric Notredame, Josep Lluis Gelpí, Alfonso Valencia

This paper describes OpenEBench, a continuous automated benchmarking system for bioinformatics methods, tools, and web services to improve reproducibility and interoperability.

bioRxiv · Aug 31, 2017 · PreprintBioinformatics