Alan Kuhnle

This paper introduces DynamicBOSS, a succinct dynamic de Bruijn graph representation that supports unlimited additions and deletions of nodes and edges, outperforming existing methods for large-scale datasets.

The paper introduces an efficient method for constructing a complete index for pan-genomics read alignment, improving memory and time efficiency over existing methods.

The paper introduces a preprocessing algorithm called prefix-free parsing to efficiently build compressed Burrows-Wheeler Transform indexes for large genomic datasets.