Author

Alexander Vergara

Swedish University of Agricultural SciencesORCID 0000-0001-6535-9282Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Åsa StrandiD· 2 shared Camilla CanoviiD· 1 shared Daniel EdleriD· 1 shared Elena M van ZaleniD· 1 shared Ellen Dimmen ChappleiD· 1 shared Fazelaat KaramatiD· 1 shared Jeanette Blomberg· 1 shared Leonor Ramirez· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Åsa StrandORCID

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3 papers

Recent·Most cited

Comparative co-expression reveals a regulatory core shared by angiosperm and conifer roots under cold

Tuuli Aro, Elena M van Zalen, Alexander Vergara, Camilla Canovi, Vikash Kumar, Ellen Dimmen Chapple, Torgeir Rhoden Hvidsten, Vaughan Hurry, Nathaniel Robert Street

The paper identifies a conserved co-expression core in root cold responses across angiosperms and gymnosperms despite species-specific gene expression and timing differences.

bioRxiv · Aug 19, 2026 · PreprintPlant Biology

IsoformMapper: A Web Application for Protein-Level Comparison of Splice Variants through Structural Community Analysis

Alexander Vergara, Tamara Hernández‐Verdeja, Pedro Ojeda-May, Leonor Ramirez, Daniel Edler, Martin Rosvall, Åsa Strand

The paper introduces IsoformMapper, a web tool that compares protein isoforms through structural community analysis, showing how alternative splicing affects protein function in Arabidopsis.

RNA · Oct 24, 2025Peer-reviewedBioinformatics

Arabidopsis mutants representing each of the four Mediator modules reveal unique functions in the transcriptional response to salt stress

Fazelaat Karamat, Alexander Vergara, Jeanette Blomberg, Tim Crawford, Nóra Lehotai, Matilda Rentoft, Åsa Strand, Stefan Björklund

The paper investigates the role of Mediator subunits in Arabidopsis salt stress response by analyzing gene expression in mutants, revealing their involvement in abiotic stress pathways.

bioRxiv · Jun 24, 2022 · PreprintGenomics