Nathaniel Robert Street

The paper identifies a conserved co-expression core in root cold responses across angiosperms and gymnosperms despite species-specific gene expression and timing differences.

The paper compares stress responses in Norway spruce and Scots pine using co-expression analysis to identify conserved regulatory mechanisms across species.

This study identifies a drought stress-induced MYB transcription factor, MYB305a, that regulates pavement cell shape in European aspen and links cell shape complexity to climatic variables.

The paper presents a comparative regulomics resource analyzing wood transcriptomes across six tree species to uncover evolutionary changes in regulatory programs for wood formation.

This paper presents a transcriptome atlas comparing zygotic and somatic embryogenesis in Norway spruce to identify gene regulatory differences and improve plant production.

The paper presents an improved chromosome-scale genome assembly for Populus tremula and integrates population genetics and genomics data to study leaf physiognomy traits through GWAS and functional analysis.

Seidr is a toolkit for gene regulatory and co-expression network inference that reduces algorithmic bias and improves robustness across species and conditions.

The paper assembles the Norway spruce mitogenome using machine learning and long reads, revealing heterogeneous recombination dynamics and active small repeats in plant mitogenomes.

GenIE-Sys provides a web-based framework for searching, visualizing, and exploring integrated genomics data from genome projects.

The paper creates an ultra-dense haploid genetic map for Norway spruce to improve genome assembly and evaluate gene distribution across chromosomes.

The paper investigates the genetic architecture of gene expression variation in Populus tremula, finding that eQTLs are more common in regulatory regions and that network connectivity correlates with selective constraint.

The paper analyzes plastomes of 65 Picea accessions to find evidence of interspecific recombination and hybridization, challenging assumptions about uniparental plastid inheritance and recombination.