Author

Lingyu Ge

Zhejiang University of TechnologyORCID 0000-0001-6549-7546Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:diffusion model· 1

Frequent Co-Authors

Guijun ZhangiD· 2 shared Xinguang Yang· 2 shared Xinyue CuiiD· 2 shared Dongliang Hou· 1 shared Xiaogen ZhouiD· 1 shared Xu‐Hui LiiD· 1 shared Xuhui Li· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Guijun ZhangORCID

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2 papers

Recent·Most cited

BioinformaticsJournal of Chemical Information and ModelingPeer-reviewedAug 27, 2026

Exploring protein conformational ensembles using evolutionary conditional diffusion

Xinyue Cui, Lingyu Ge, Xinguang Yang…·Guijun Zhang

This paper introduces DiffEnsemble, a diffusion-based framework for modeling protein conformational ensembles, showing improved performance over existing methods.

1 citation

protein structurediffusion model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 23, 2025

M-DeepAssembly2: A Web Server for Predicting Multiple Conformations of Multi-domain Proteins Using Deep Learning

Xinyue Cui, Lingyu Ge, Xinguang Yang…·Guijun Zhang

M-DeepAssembly2 predicts multiple conformations of multi-domain proteins using deep learning, improving accuracy over previous methods.

DOI 10.1101/2025.10.23.684122

protein structuredeep learning

𝕏 PostBluesky