Author
University of DelawareORCID 0000-0001-6654-3495Unclaimed ORCID profile · follow to get notified of new preprints
7 papers
Recent·Most cited
Arkadiy I. Garber, Isabella A. Viney, Nancy Merino…·Ileana Pérez‐Rodríguez
MagicLamp provides a toolkit and web server for targeted microbial function annotation using curated HMMs, enabling sensitive and specific gene annotation for specialized processes.
Zachary J. Gold, Kristin M. Robinson, Alyssa-Lois Madden Gehman…·Sean M. McAllister
The paper develops and validates an eDNA assay for the sunflower sea star to monitor its populations and assess recovery efforts.
Arkadiy I. Garber, Catherine R. Armbruster, Stella E. Lee…·Sean M. McAllister
SprayNPray provides a user-friendly tool for taxonomic profiling of genome and metagenome contigs using multiple metrics to classify and analyze sequences.
Ryan M. Moore, Amelia O. Harrison, Sean M. McAllister…·K. Eric Wommack
Iroki automates the customization and visualization of phylogenetic trees using metadata, enabling easier exploration of microbial ecology data.
Arkadiy I. Garber, Kenneth H. Nealson, Akihiro Okamoto…·Nancy Merino
FeGenie identifies iron-related genes and gene clusters in genomes and metagenomes using a comprehensive HMM database, improving detection of iron oxidation and reduction genes.
Sean M. McAllister, Ryan M. Moore, Clara S. Chan
ZetaHunter classifies 16S rRNA gene sequences into OTUs for Zetaproteobacteria and other taxa using a curated database.
Jacob P. Beam, Jarrod J. Scott, Sean M. McAllister…·David Emerson
The paper identifies iron-oxidizing Zetaproteobacteria as a major source of sedimentary iron oxides in coastal sediments, driven by burrowing animals.