Author

William A. Baumgartner

University of Colorado AnschutzORCID 0000-0001-6717-5313Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Lawrence HunteriD· 2 shared Ignacio J. TripodiiD· 1 shared Mayla R. BoguslaviD· 1 shared Michael A. BadaiD· 1 shared Negacy Hailu· 1 shared Tiffany J. CallahaniD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 9 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Lawrence HunterORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedDec 17, 2021

Concept Recognition as a Machine Translation Problem

Mayla R. Boguslav, Negacy Hailu, Michael A. Bada…·Lawrence Hunter

This paper explores sequence-to-sequence machine translation for concept recognition in biomedical text, achieving state-of-the-art results on the CRAFT Corpus with lower computational demands.

8 citations

machine learning (classical)benchmarking

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 30, 2020

A Framework for Automated Construction of Heterogeneous Large-Scale Biomedical Knowledge Graphs

Tiffany J. Callahan, Ignacio J. Tripodi, Lawrence Hunter, William A. Baumgartner

The paper introduces PheKnowLator, a framework for constructing large-scale biomedical knowledge graphs, and evaluates its performance on human disease mechanisms.

22 citations

humanexperimental assay

𝕏 PostBluesky