Author

Dhammapal Bharne

Dalhousie UniversityORCID 0000-0001-6729-1699Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Daniel GastoniD· 1 shared Netrika Tiwari· 1 shared Rakhee Nayak· 1 shared Sailu YellaboinaiD· 1 shared SHARMISTHA CHAITALI GHOSH· 1 shared Sreenivasulu KurukutiiD· 1 shared Srinivas Kethavath· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Daniel GastonORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 11, 2026

Evaluation of somatic variant calling methods on high coverage tumour-only amplicon sequencing data in a clinical environment

Dhammapal Bharne, Daniel Gaston

The paper evaluates six somatic variant callers on high coverage tumour-only amplicon sequencing data, finding FreeBayes, VarScan, MuTect2, and Pisces perform best.

DOI 10.64898/2026.04.08.717310

whole-exome sequencingstatistical model

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GenomicsbioRxivPreprintDec 29, 2025

MicroRNA-mRNA Gene Regulatory Circuitry Orchestrates the Epigenetic and Transcriptional Reprogramming from Pluripotency to Murine Mammary Epithelial stem-like-Cells lactogenic differentiation

Rakhee Nayak, Netrika Tiwari, SHARMISTHA CHAITALI GHOSH…·Sreenivasulu Kurukuti

The paper identifies miRNA-mRNA regulatory networks during lactogenic differentiation of murine mammary epithelial cells, revealing key signaling pathways and epigenetic regulators involved in the transition from pluripotency to lactation.

DOI 10.64898/2025.12.29.696863

mousebulk RNA-seq

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