Author

Rakhee Nayak

University of Hyderabad

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:human· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Sreenivasulu KurukutiiD· 3 shared Keerthivasan Raanin ChandradossiD· 2 shared Kuljeet Singh SandhuiD· 2 shared Srinivas Kethavath· 2 shared Aprotim MazumderiD· 1 shared Bindia Chawla· 1 shared Dhammapal BharneiD· 1 shared Harpreet SinghiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersGenomics

Sreenivasulu KurukutiORCID

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3 papers

Recent·Most cited

MicroRNA-mRNA Gene Regulatory Circuitry Orchestrates the Epigenetic and Transcriptional Reprogramming from Pluripotency to Murine Mammary Epithelial stem-like-Cells lactogenic differentiation

Rakhee Nayak, Netrika Tiwari, SHARMISTHA CHAITALI GHOSH, Srinivas Kethavath, Dhammapal Bharne, Sailu Yellaboina, Sreenivasulu Kurukuti

The paper identifies miRNA-mRNA regulatory networks during lactogenic differentiation of murine mammary epithelial cells, revealing key signaling pathways and epigenetic regulators involved in the transition from pluripotency to lactation.

bioRxiv · Dec 29, 2025 · PreprintGenomics

CTCF mediated genome architecture regulates the dosage of mitotically stable mono-allelic expression of autosomal genes

Keerthivasan Raanin Chandradoss, Bindia Chawla, Shivnarayan Dhuppar, Rakhee Nayak, Rajesh Ramachandran, Sreenivasulu Kurukuti, Aprotim Mazumder, Kuljeet Singh Sandhu

The paper shows that CTCF-mediated chromatin loops create genomic insulation that enables mono-allelic expression of autosomal genes and protects their dosage from fluctuations.

Cell Reports · Oct 1, 2020Peer-reviewedGenomics

Repurposing the biased visibility in HiC datasets to mark dynamically regulated condensed and decondensed chromatin states genome-wide.

Keerthivasan Raanin Chandradoss, Prashanth Kumar Guthikonda, Srinivas Kethavath, Monika Dass, Harpreet Singh, Rakhee Nayak, Sreenivasulu Kurukuti, Kuljeet Singh Sandhu

The paper shows HiC datasets have bias due to chromatin condensation, which can be used to study dynamic chromatin states.

bioRxiv · Mar 31, 2019 · PreprintGenomics