Author

Inti Zlobec

University of BernORCID 0000-0001-6741-3000Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:imaging· 1 Approach:microscopy & imaging analysis· 1 Approach:optimal transport· 1 Assay:scRNA-seq· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Philipp KirchneriD· 2 shared Alessandro LugliiD· 1 shared Amjad Ali KhaniD· 1 shared Ariadna Acedo-TerradesiD· 1 shared Cansaran Saygili DemiriD· 1 shared Cristina Graham MartíneziD· 1 shared Hannah L. WilliamsiD· 1 shared Joanna Kowal· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Philipp KirchnerORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Cross-Cohort Optimal Transport Maps Macrophage Plasticity and Competing Routes to Inflammation and Fibrosis in Human Atherosclerotic Plaques

Sergio Vazquez Montes de Oca, Ariadna Acedo-Terrades, Jose F Carreno Martinez, Philipp Kirchner, Tiit Örd, Minna Unelma Kaikkonen, Siting Wei, Stefan Freigang, Inti Zlobec, María Rodríguez Martínez

The paper develops a computational framework using optimal transport to analyze macrophage state transitions in atherosclerosis, identifying origin-dependent plasticity mechanisms and shared regulatory circuits in inflammation and fibrosis.

bioRxiv · Aug 20, 2026 · PreprintBioinformatics

Morpho-molecular features of Epithelial Mesenchymal Transition associate with clinical outcome in patients with rectal cancer

Mauro Gwerder, Cansaran Saygili Demir, Hannah L. Williams, Alessandro Lugli, Cristina Graham Martínez, Joanna Kowal, Amjad Ali Khan, Philipp Kirchner, Thibaud Koessler, Martin D. Berger, Martin Weigert, Inti Zlobec

The paper links morpho-molecular features of epithelial-mesenchymal transition (EMT) in rectal cancer biopsies to clinical outcomes, showing their association with survival after chemoradiotherapy.

bioRxiv · Nov 7, 2024 · PreprintCancer Biology