Author

Siting Wei

Utrecht University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Approach:optimal transport· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Ariadna Acedo-TerradesiD· 1 shared Arjan BoltjesiD· 1 shared Daniek KapteijniD· 1 shared Dominique P.V. de KleijniD· 1 shared Ernest Diez BenaventeiD· 1 shared Gary K. OwensiD· 1 shared Gerard PasterkampiD· 1 shared Gert Jan de BorstiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Ariadna Acedo-TerradesORCID

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2 papers

Recent·Most cited

Cross-Cohort Optimal Transport Maps Macrophage Plasticity and Competing Routes to Inflammation and Fibrosis in Human Atherosclerotic Plaques

Sergio Vazquez Montes de Oca, Ariadna Acedo-Terrades, Jose F Carreno Martinez, Philipp Kirchner, Tiit Örd, Minna Unelma Kaikkonen, Siting Wei, Stefan Freigang, Inti Zlobec, María Rodríguez Martínez

The paper develops a computational framework using optimal transport to analyze macrophage state transitions in atherosclerosis, identifying origin-dependent plasticity mechanisms and shared regulatory circuits in inflammation and fibrosis.

bioRxiv · Aug 20, 2026 · PreprintBioinformatics

Identification of endothelial-to-mesenchymal transition gene signatures in single-cell transcriptomics of human atherosclerotic tissue

Lotte Slenders, Marian Wesseling, Siting Wei, Arjan Boltjes, Daniek Kapteijn, Petra H. van der Kraak, Marie A.C. Depuydt, Koen H.M. Prange, Noortje A. M. van den Dungen, Ernest Diez Benavente, Dominique P.V. de Kleijn, Gert Jan de Borst, Menno P.J. de Winther, Hester M. den Ruijter, Gary K. Owens, , Michal Mokrý

The paper identifies gene signatures of endothelial-to-mesenchymal transition in human atherosclerotic tissue using combined in vitro and single-cell transcriptomic data.

Vascular Pharmacology · May 1, 2025Peer-reviewedMolecular Biology