Author

Delphine Nègre

École Centrale de NantesORCID 0000-0001-6746-9434Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:fungi (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Abdelhalim LarhlimiiD· 2 shared Samuel BertrandiD· 2 shared Agnès GroisillieriD· 1 shared Agnieszka P. LipinskaiD· 1 shared Ahlem Bouguerba-ColliniD· 1 shared Ahmed DebitiD· 1 shared Akira F. PetersiD· 1 shared Alexander JueterbockiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersSystems Biology

Abdelhalim LarhlimiORCID

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3 papers

Recent·Most cited

Systems BiologyBiotechnology and BioengineeringPeer-reviewedMar 8, 2026

A Required Sensitivity Analysis for Predictive Reliability of Genome-Scale Metabolic Networks: Probing Biomass, Nutrient Conditions, and Specialised Metabolism with Penicillium rubens as a Case Study

Delphine Nègre, Abdelhalim Larhlimi, Samuel Bertrand

1 citation

fungi (other)metabolomics

𝕏 PostBluesky

GenomicsCellPeer-reviewedNov 1, 2024

Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denœud, Olivier Godfroy, Corinne Cruaud…·Hwan Su Yoon

This study analyzes 60 brown algal genomes to identify genomic innovations and evolutionary patterns that enabled their adaptation to coastal ecosystems.

94 citationstop 1%

whole-genome sequencingstatistical model

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BioinformaticsPLoS ONEPeer-reviewedAug 30, 2023

Reconciliation and Evolution of Penicillium rubens Genome-Scale Metabolic Networks - What about Specialised Metabolism?

Delphine Nègre, Abdelhalim Larhlimi, Samuel Bertrand

The paper reconstructs a high-quality genome-scale metabolic network for Penicillium rubens and identifies bottlenecks in defining specialised metabolites.

8 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky