Author

Abdelhalim Larhlimi

École Centrale de NantesORCID 0000-0002-1709-2648Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2 Bioinformatics· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Organism:fungi (other)· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:metabolomics· 1 Assay:metagenomics· 1

Frequent Co-Authors

Delphine NègreiD· 2 shared Samuel BertrandiD· 2 shared Alejandro MaassiD· 1 shared Antoine RégimbeauiD· 1 shared Antoine RimbertiD· 1 shared Bertrand CariouiD· 1 shared Camille TrottieriD· 1 shared Cédric Le MayiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersSystems Biology

Delphine NègreORCID

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4 papers

Recent·Most cited

Systems BiologyBiotechnology and BioengineeringPeer-reviewedMar 8, 2026

A Required Sensitivity Analysis for Predictive Reliability of Genome-Scale Metabolic Networks: Probing Biomass, Nutrient Conditions, and Specialised Metabolism with Penicillium rubens as a Case Study

Delphine Nègre, Abdelhalim Larhlimi, Samuel Bertrand

1 citation

fungi (other)metabolomics

PhysiologybioRxivPreprintDec 4, 2025

Comparative Transcriptomic Analysis of Obesity and Lipodystrophy Reveals Shared Mechanisms and Novel Targets in Adipose Tissue Dysfunction

Rola Shaaban, Antoine Rimbert, Yoann Combot…·Xavier Prieur

This study identifies a shared molecular signature in adipose tissue dysfunction across obesity and lipodystrophy, revealing common metabolic pathways and genetic loci associated with type 2 diabetes.

DOI 10.64898/2025.12.03.692243

mousebulk RNA-seq

Systems BiologybioRxivPreprintFeb 13, 2025

Planetary-scale heterotrophic microbial community modeling assesses metabolic synergy and viral impacts

Antoine Régimbeau, Funing Tian, Garrett J. Smith…·Damien Eveillard

The paper develops a genome-scale metabolic model for ocean microbial communities to infer metabolic processes and viral impacts on biogeochemical cycles.

3 citations

metagenomicsstatistical model

BioinformaticsPLoS ONEPeer-reviewedAug 30, 2023

Reconciliation and Evolution of Penicillium rubens Genome-Scale Metabolic Networks - What about Specialised Metabolism?

Delphine Nègre, Abdelhalim Larhlimi, Samuel Bertrand

The paper reconstructs a high-quality genome-scale metabolic network for Penicillium rubens and identifies bottlenecks in defining specialised metabolites.

8 citations

fungi (other)whole-genome sequencing