Author

Ahmed Halioui

Université du Québec à MontréalORCID 0000-0001-6795-4085Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:machine learning (classical)· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Abdoulaye Baniré DialloiD· 3 shared Petko ValtcheviD· 2 shared Abou Abdallah Malick DiouaraiD· 1 shared Bruno DaigleiD· 1 shared Golrokh Kiani· 1 shared Mohamed Amine RemitaiD· 1 shared

Activity by Year

2016-2017 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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3 shared papersBioinformatics

Abdoulaye Baniré DialloORCID

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3 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedApr 10, 2017

CASTOR: A machine learning platform for reproducible viral genome classification

Mohamed Amine Remita, Ahmed Halioui, Abou Abdallah Malick Diouara…·Abdoulaye Baniré Diallo

CASTOR classifies viral genomes using machine learning, achieving high accuracy for HPV, HBV, and HIV with a web platform for open access.

69 citations

whole-genome sequencingmachine learning (classical)

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 24, 2016

Towards an ontology-based recommender system for relevant bioinformatics workflows

Ahmed Halioui, Petko Valtchev, Abdoulaye Baniré Diallo

The paper proposes an ontology-based framework to extract and mine bioinformatics workflows from scientific articles, focusing on phylogenetic analyses, to identify best practices and support workflow reuse.

8 citations

statistical modelbenchmarking

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 24, 2016

Ontology-based workflow extraction from texts using word sense disambiguation

Ahmed Halioui, Petko Valtchev, Abdoulaye Baniré Diallo

This paper presents an ontology-based workflow extraction method using word sense disambiguation to acquire processual knowledge from texts, applied to phylogenetic analyses.

2 citations

statistical modelbenchmarking

𝕏 PostBluesky