Author

Leen Stougie

Institut national de recherche en sciences et technologies du numériqueORCID 0000-0001-6938-8902Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Approach:optimal transport· 1 Research Focus:variant effect prediction· 1 Organism:virus· 1

Frequent Co-Authors

Alexander SchönhuthiD· 2 shared Jasmijn A. BaaijensiD· 2 shared Bastiaan R. Van der RoestiD· 1 shared Johannes KösteriD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Alexander SchönhuthORCID

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2 papers

Recent·Most cited

Strain-aware assembly of genomes from mixed samples using flow variation graphs

Jasmijn A. Baaijens, Leen Stougie, Alexander Schönhuth

VG-Flow enables strain-aware full-length genome assembly from mixed samples using a de novo approach that improves contiguity and haplotype abundance estimation.

bioRxiv · Feb 11, 2020 · PreprintBioinformatics

Full-length de novo viral quasispecies assembly through variation graph construction

Jasmijn A. Baaijens, Bastiaan R. Van der Roest, Johannes Köster, Leen Stougie, Alexander Schönhuth

The paper introduces a method for full-length de novo viral quasispecies assembly using variation graphs, improving contiguity and accuracy over existing methods.

Bioinformatics · May 27, 2019Peer-reviewedBioinformatics