Pierre M. Joubert

The paper uses GROVER to analyze how DNA sequence, chromatin, and regulatory features influence genome stability by predicting DSB locations and identifying sequence tokens associated with DSB sensitivity.

This study uses deep learning to predict replication timing and finds DNA sequence provides sufficient information for prediction, with epigenetic features adding complementary value.

The paper examines TE variation in Magnaporthe oryzae pathotypes, revealing differences in TE expansion dynamics and evolutionary history across host-specific lineages.

The paper identifies genomic and epigenomic features associated with gene presence-absence variation in fungal plant pathogens and shows that these features differ between pathotypes.

This study characterizes the circularome of Magnaporthe oryzae, revealing diverse LTR retrotransposons, genes, and effectors on extrachromosomal circular DNAs.