Nathan P. Boley

ENCODE's containerised Workflow Description Language pipelines for ChIP-seq, ATAC-seq, DNase-seq, RNA-seq variants, Hi-C and bisulfite sequencing run on cloud or local clusters, with documented compute costs and provenance.

GenomeDISCO measures concordance between chromosome conformation capture contact maps by smoothing them with random walks, distinguishing biological replicates from different cell types.