Author

Brendan Mumey

Montana State UniversityORCID 0000-0001-7151-2124Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Adiesha LiyanageiD· 1 shared Allison Shi· 1 shared Bella Root· 1 shared Binhai ZhuiD· 1 shared Braeden SoppiD· 1 shared Daniel Salinas· 1 shared Elyse Onstott· 1 shared Indika KahandaiD· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperCancer Biology

Adiesha LiyanageORCID

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3 papers

Recent·Most cited

EssentCell: Discovering Essential Evolutionary Relations in Noisy Single-Cell Data

Adiesha Liyanage, Robyn Burger, Allison Shi, Braeden Sopp, Binhai Zhu, Brendan Mumey

EssentCell identifies essential evolutionary relations in noisy single-cell data by solving a minimum-flip problem with false positive constraints.

IEEE Transactions on Computational Biology and Bioinformatics · May 7, 2026Peer-reviewedCancer Biology

PanACRpred: Predicting Accessible Chromatin Regions in Pangenomes using Motif Chaining

Madelyn Warr, Trung Dinh, Bella Root, Elyse Onstott, Kevin Yu, Joann Mudge, Thiruvarangan Ramaraj, Indika Kahanda, Brendan Mumey

The paper predicts accessible chromatin regions in plant genomes using motif chaining and machine learning models.

Communications in computer and information science · Jan 1, 2026Peer-reviewedBioinformatics

Physiological Dynamic Compression Regulates Central Energy Metabolism in Primary Human Chondrocytes

Daniel Salinas, Brendan Mumey, Ronald K. June

The paper shows that mechanical compression alters central metabolism in human chondrocytes, with grade IV osteoarthritic cells synthesizing amino acid precursors in response.

Biomechanics and Modeling in Mechanobiology · Aug 10, 2018Peer-reviewedSystems Biology