Joann Mudge

Genomes of three Sympatric Species of an Adaptive Radiation: Cyprinodon variegatus, C. desquamator, and C. brontotheroides

The paper presents high-quality reference genomes for three sympatric Cyprinodon pupfish species to study speciation mechanisms and genomic architecture.

Haplotype-resolved genome of autotetraploid alfalfa (Medicago sativa) Regen-SY27x uncovers large scale structural variation and resistance gene dynamics

The paper presents a haplotype-resolved genome assembly of autotetraploid alfalfa, revealing extensive structural variation and resistance gene dynamics.

PanACRpred: Predicting Accessible Chromatin Regions in Pangenomes using Motif Chaining

The paper predicts accessible chromatin regions in plant genomes using motif chaining and machine learning models.

Loss of KHSRP Increases Neuronal Growth and Synaptic Transmission and Alters Memory Consolidation Through RNA Stabilization

Disease association with frequented regions of genotype graphs

This paper introduces a method to improve disease classification by analyzing frequented regions in a pangenomic graph, outperforming traditional GWAS approaches.

Dynamic Extreme Aneuploidy (DEA) in the vegetable pathogen Phytophthora capsici sheds light on instant evolution and intractability.

The paper identifies Dynamic Extreme Aneuploidy (DEA) in Phytophthora capsici, showing high genetic instability and rapid allele changes in single-spore progeny.