Author

Aditya Sriram

University of PittsburghORCID 0000-0001-7356-7014Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1

Frequent Co-Authors

Brian M. WaskoiD· 1 shared Hyun Jung ParkiD· 1 shared Hyun Jung ParkiD· 1 shared Jeffrey Garcia· 1 shared Jie SuniD· 1 shared Laizhi ZhangiD· 1 shared Maisee Brown· 1 shared Soyeon KimiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBioinformatics

Brian M. WaskoORCID

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3 papers

Recent·Most cited

Prediction transfer does not imply reliability transfer in single-cell foundation models

Aditya Sriram, Tianze Luo, Laizhi Zhang, Soyeon Kim, Hyun Jung Park

The paper investigates reliability transfer in single-cell foundation models across biological contexts and finds it varies independently from prediction transfer.

bioRxiv · Oct 26, 2026 · PreprintBioinformatics

BUDDY: An interactive web platform to accelerate the functional modeling of human missense variants using Saccharomyces cerevisiae orthologs

Maisee Brown, Aditya Sriram, Jeffrey Garcia, Brian M. Wasko

BUDDY is a web platform that streamlines the functional modeling of human missense variants using yeast orthologs, reducing bioinformatic preparation time and enabling non-experts to design experiments.

bioRxiv · Oct 23, 2026 · PreprintBioinformatics

Unveiling the Gut Microbiome Network Fingerprint: A Deep Learning Approach to Predict Immunotherapy Response in Melanoma Patients.

Jie Sun, Zhenjiang Fan, Aditya Sriram, Hyun Jung Park

This study uses DeepMicroNET, a deep learning model, to identify gut bacteria consistently predicting immunotherapy response in melanoma patients across multiple cohorts.

bioRxiv · Oct 21, 2024 · PreprintMicrobiology