Author

Qiqing Tao

Temple UniversityORCID 0000-0001-7360-409XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Sudhir KumariD· 2 shared Jose Barba‐MontoyaiD· 1 shared Marcos A. Caraballo‐OrtiziD· 1 shared Maxwell D. SanderfordiD· 1 shared Sayaka MiuraiD· 1 shared Sergei L. Kosakovsky PondiD· 1 shared Steven WeaveriD· 1 shared Tenzin Dolker· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Sudhir KumarORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMar 23, 2022

TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

Marcos A. Caraballo‐Ortiz, Sayaka Miura, Maxwell D. Sanderford…·Sudhir Kumar

TopHap infers phylogenetic structures from common haplotypes in large genome collections, improving accuracy and speed for SARS-CoV-2 variant phylogeny.

9 citations

viruswhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedSep 7, 2020

Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated

Jose Barba‐Montoya, Qiqing Tao, Sudhir Kumar

This study evaluates the impact of violating time-reversibility and stationarity assumptions in molecular dating using simulated data and finds that biases are small and reducible with multiple calibrations.

17 citations

DNA methylationstatistical model

𝕏 PostBluesky