Author

Sayaka Miura

Temple UniversityORCID 0000-0001-9881-2848Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:Bayesian inference· 1 Approach:deep learning· 1 Research Focus:imputation· 1 Research Focus:phylogenetics / evolution· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Sudhir KumariD· 3 shared Antonia Chroni· 1 shared Jack M. CraigiD· 1 shared Koichiro TamuraiD· 1 shared Marcos A. Caraballo‐OrtiziD· 1 shared Maxwell D. SanderfordiD· 1 shared Maxwell Sanderford· 1 shared Mohammed Erfan Mowlaei· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersBioinformatics

Sudhir KumarORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 7, 2026

De novo transformer modeling improves recovery of genetic cell types from sparse single-cell RNA sequencing

Jack M. Craig, Mohammed Erfan Mowlaei, Sayaka Miura…·Sudhir Kumar

This study develops a sample-specific transformer model to improve genotype imputation from sparse single-cell RNA sequencing data, enhancing the recovery of genetic cell types.

DOI 10.64898/2026.08.03.742620

humanscRNA-seq

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BioinformaticsBioinformaticsPeer-reviewedMar 23, 2022

TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

Marcos A. Caraballo‐Ortiz, Sayaka Miura, Maxwell D. Sanderford…·Sudhir Kumar

TopHap infers phylogenetic structures from common haplotypes in large genome collections, improving accuracy and speed for SARS-CoV-2 variant phylogeny.

9 citations

viruswhole-genome sequencing

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Evolutionary BiologybioRxivJul 10, 2020

PathFinder: Bayesian inference of clone migration histories in cancer

Sudhir Kumar, Antonia Chroni, Koichiro Tamura…·Sayaka Miura

PathFinder infers cancer clone migration histories using Bayesian methods, showing improved accuracy with more clones and genetic variants.

DOI 10.1093/bioinformatics/btaa795

humanwhole-genome sequencing

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