Author

Anasua Sarkar

Jadavpur UniversityORCID 0000-0001-7365-3924Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:GWAS summary statistics· 1

Frequent Co-Authors

Anamika BasuiD· 1 shared Mauno VihineniD· 1 shared Srijani Bagchi· 1 shared Ujjwal MaulikiD· 1 shared Ujjwal MaulikiD· 1 shared Yang YangiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 3 mutual co-author links

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1 shared paperBioinformatics

Anamika BasuORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 16, 2022

Topology Adaptive Graph Convolution Network With Heterogeneous Entities For Predicting Adverse Events from Drug-Drug-Interactions

Srijani Bagchi, Anasua Sarkar, Ujjwal Maulik

The paper develops a Topology Adaptive Graph Convolution Network to predict adverse events from drug-drug interactions using functional similarity and knowledge graphs.

2 citations

graph neural networkdrug response / drug discovery

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 26, 2020

Study of cell to cell transmission of SARS CoV 2 virus particle using gene network from micro array data

Anamika Basu, Anasua Sarkar, Ujjwal Maulik

The paper constructs a gene network from microarray data to study SARS-CoV-2 host response and identifies potential therapeutic targets.

4 citations

humanbulk RNA-seq

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BioinformaticsDatabasePeer-reviewedSep 4, 2019

Variation benchmark datasets: update, criteria, quality and applications

Anasua Sarkar, Yang Yang, Mauno Vihinen

The paper updates a benchmark dataset for variant effect prediction, categorizes new datasets, and demonstrates their utility in evaluating pathogenicity predictors.

52 citations

GWAS summary statisticsbenchmark study

𝕏 PostBluesky