Author

Gökalp Yildirir

University of OttawaORCID 0000-0001-7455-0986Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:fungi (other)· 4 Research Focus:gene regulatory network inference· 3 Assay:long-read sequencing· 3 Research Focus:genome assembly· 2 Assay:Hi-C· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

Nicolas CorradiiD· 5 shared Jana SperschneideriD· 3 shared Ariane Mayrand NicoliD· 2 shared Jordana Inácio Nascimento OliveiraiD· 2 shared Ken MugambiiD· 2 shared Mathu Malar CiD· 2 shared Wataru IwasakiiD· 2 shared Alessandra Salvioli di FossalungaiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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5 shared papersGenomics

Nicolas CorradiORCID

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5 papers

Recent·Most cited

GenomicsNew PhytologistPeer-reviewedMar 20, 2026

The 3D Genome of Gigaspora margarita Unveils Stable Chromatin and Nucleolar Organization and Symbiont-Dependent Genome Dynamics

Ken Mugambi, Jordana Inácio Nascimento Oliveira, Franco Magurno…·Nicolas Corradi

This study presents a 3D genome assembly of Gigaspora margarita and its endobacterium, revealing stable chromatin compartments and symbiont-dependent genome dynamics.

5 citationstop 1%

fungi (other)whole-genome sequencing

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GenomicsGenome Biology and EvolutionPeer-reviewedMar 1, 2025

Analyses of transposable elements in arbuscular mycorrhizal fungi support evolutionary parallels with filamentous plant pathogens

Jordana Inácio Nascimento Oliveira, Catrina Lane, Ken Mugambi…·Nicolas Corradi

The paper analyzes transposable elements in arbuscular mycorrhizal fungi to show their role in genome evolution and host interaction, finding parallels with plant pathogens.

6 citations

fungi (other)DNA methylation

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GenomicsNature MicrobiologyPeer-reviewedOct 26, 2023

Resolving the haplotypes of arbuscular mycorrhizal fungi highlights the role of two nuclear populations in host interactions

Jana Sperschneider, Gökalp Yildirir, Yanina Soledad Rizzi…·Nicolas Corradi

The paper resolves the haplotypes of arbuscular mycorrhizal fungi and identifies two nuclear populations involved in host interactions.

62 citationstop 1%

Hi-Clong-read sequencing

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GenomicsG3 Genes Genomes GeneticsPeer-reviewedMar 31, 2023

A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis

Bethan F. Manley, Jaruwatana Sodai Lotharukpong, Josué Barrera‐Redondo…·Alexandra Dallaire

The paper presents a high-quality genome assembly of Rhizophagus irregularis, revealing genomic innovations specific to the Glomeromycotina subphylum.

29 citationstop 5%

fungi (other)whole-genome sequencing

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GenomicsNew PhytologistPeer-reviewedNov 7, 2021

Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

Gökalp Yildirir, Jana Sperschneider, Mathu Malar C…·Nicolas Corradi

The paper uses long reads and Hi-C sequencing to analyze genome structure and compartmentalization in Rhizophagus irregularis, revealing two distinct chromatin compartments with different gene and repeat content.

89 citationstop 2%

fungi (other)long-read sequencing

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