Author

Samuel C Talbot

Oregon State UniversityORCID 0000-0001-7480-1343Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Research Focus:genome assembly· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:variant calling· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Kelly J. ViningiD· 3 shared Ahmed Z. Alsulaimawi· 1 shared Anish KrishnaniD· 1 shared Asaf A. SalamoviD· 1 shared Asees KauriD· 1 shared Bernd Markus LangeiD· 1 shared Charles Raymond Brown· 1 shared Christian MandelliiD· 1 shared

Activity by Year

2024-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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3 shared papersGenomics

Kelly J. ViningORCID

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5 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 1, 2026

✦ In-depth digest

Accurate ab initio gene prediction in eukaryotes with Tiberius in multiple clades

Lars Gabriel, Tomáš Brůna, Asees Kaur…·Katharina J. Hoff

Extended Tiberius models outscore Helixer and ANNEVO on all 33 genomes from the five clades all three tools cover, and approach BRAKER3 accuracy in four clades without extrinsic evidence.

DOI 10.64898/2026.04.24.720536

multiple specieswhole-genome sequencing

𝕏 PostBluesky

Plant BiologybioRxivPreprintJan 30, 2026

Grapevine Red Blotch Virus Induces Haplotype-specific Genetic and Epigenetic Responses

Christian Mandelli, Samuel C Talbot, Ahmed Z. Alsulaimawi, Laurent G. Deluc

This study uses haplotype-resolved genomics to show GRBV induces distinct genetic and epigenetic responses in grapevines, revealing asymmetric antiviral strategies and epigenetic reprogramming.

DOI 10.64898/2026.01.29.702617

virusbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 20, 2024

Unlocking the Genetic Potential of Solanum bulbocastanum (SB22, Selection 22): A Valuable Resource for Enhancing Disease Resistance in Commercial Potato Cultivars

Senthilkumar Shanmugavel, Kelly J. Vining, Samuel C Talbot…·Vidyasagar R. Sathuvalli

The paper presents the chromosome-level genome assembly of Solanum bulbocastanum SB22 and identifies disease resistance genes relevant to potato breeding.

1 citation

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 15, 2024

A first look at the genome structure of hexaploid 'Black Mitcham' peppermint (Mentha piperita L.)

Samuel C Talbot, Kelly J. Vining, Bernd Markus Lange, Iovanna Pandelova

The paper presents the first draft polyploid chromosome-level genome assembly for hexaploid peppermint, aiding studies on disease resistance and hybridization.

DOI 10.1101/2024.03.15.585188

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedFeb 7, 2024

A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance

Samuel C Talbot, Kelly J. Vining, Jacob Snelling…·Shawn A. Mehlenbacher

The paper presents a haplotype-resolved chromosome-level genome assembly of European hazelnut, identifying gene candidates linked to EFB resistance.

5 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky