Author

Yannek Nowatzky

Federal Institute For Materials Research and TestingORCID 0000-0001-7537-3694Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:graph neural network· 1 Assay:metabolomics· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Knut ReinertiD· 2 shared Philipp BenneriD· 2 shared Thilo MuthiD· 2 shared Alexander Kister· 1 shared Francesco F. Russo· 1 shared Jan LiseciD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Knut ReinertORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedMar 7, 2025

Fiora: Local neighborhood-based prediction of compound mass spectra from single fragmentation events

Yannek Nowatzky, Francesco F. Russo, Jan Lisec…·Philipp Benner

Fiora predicts compound mass spectra from single fragmentation events using graph neural networks, outperforming existing methods and enabling faster spectral library expansion.

22 citationstop 2%

metabolomicsgraph neural network

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJun 1, 2023

Mistle: bringing spectral library predictions to metaproteomics with an efficient search index

Yannek Nowatzky, Philipp Benner, Knut Reinert, Thilo Muth

Mistle improves metaproteomics by efficiently searching predicted spectral libraries, outperforming existing tools in speed and memory usage.

12 citations

metagenomicsproteomics

𝕏 PostBluesky