Author

Alexey Stupnikov

Johns Hopkins UniversityORCID 0000-0001-7605-410XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alexander V. FavoroviD· 2 shared Luigi MarchionniiD· 2 shared Alexey SizykhiD· 1 shared Andrew E. JaffeiD· 1 shared Bahman AfsariiD· 1 shared Ben LangmeadiD· 1 shared Chi-Wai Yip· 1 shared Christopher WilksiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Alexander V. FavorovORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 12, 2021

Hobotnica: exploring molecular signature quality

Alexey Stupnikov, Alexey Sizykh, Alexander V. Favorov…·Yulia A. Medvedeva

Hobotnica estimates molecular signature quality by assessing their ability to stratify data and assign significance scores for comparing different groups.

DOI 10.1101/2021.09.12.459931

statistical modelbenchmarking

𝕏 PostBluesky

GenomicsGenome ResearchPeer-reviewedJul 1, 2020

Recounting the FANTOM Cage Associated Transcriptome

Eddie L. Imada, Diego Fernando Sanchez, Leonardo Collado‐Torres…·Luigi Marchionni

The paper presents FC-R2, an expanded transcriptome atlas of over 109,000 genes, including lncRNAs, and demonstrates its utility in analyzing gene expression across normal and diseased human samples.

29 citations

humanbulk RNA-seq

𝕏 PostBluesky