Author

Diego Fernando Sanchez

Johns Hopkins UniversityORCID 0000-0002-9503-1947Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Alexander V. FavoroviD· 2 shared Eddie L. ImadaiD· 2 shared Jeffrey T. LeekiD· 2 shared Kayoko YasuzawaiD· 2 shared Luigi MarchionniiD· 2 shared Masayoshi ItohiD· 2 shared Naoto Kondo· 2 shared Aditi KanhereiD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Alexander V. FavorovORCID

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3 papers

Recent·Most cited

CellPie: a scalable spatial transcriptomics factor discovery method via joint non-negative matrix factorization

Sokratia Georgaka, William Geraint Morgans, Qian Zhao, Diego Fernando Sanchez, Amin Ali, Mohamed Ghafoor, Syed-Murtuza Baker, Robert Glen Bristow, Mudassar Iqbal, Magnus Rattray

CellPie is a fast, unsupervised method for factor discovery in spatial transcriptomics using joint non-negative matrix factorization, showing improved performance on human cancer datasets.

Nucleic Acids Research · Mar 20, 2025Peer-reviewedBioinformatics

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Jordan A. Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V. Kulakovskiy, Mickaël Mendez, Jasmine Li Ching Ooi, John F. Ouyang, Nick Parkinson, Andreas Petri, Leonie Roos, Jessica Severin, Kayoko Yasuzawa, Imad Abugessaisa, , Chinatsu Yamamoto

The paper functionally annotates human long non-coding RNAs by systematically knocking down 285 lncRNAs and analyzing molecular phenotypes using CAGE sequencing.

Genome Research · Jul 1, 2020Peer-reviewedGenomics

Recounting the FANTOM Cage Associated Transcriptome

Eddie L. Imada, Diego Fernando Sanchez, Leonardo Collado‐Torres, Christopher Wilks, Tejasvi Matam, Wikum Dinalankara, Alexey Stupnikov, Francisco Pereira Lobo, Chi-Wai Yip, Kayoko Yasuzawa, Naoto Kondo, Masayoshi Itoh, Harukazu Suzuki, Takeya Kasukawa, Chung-Chau Hon, , Luigi Marchionni

The paper presents FC-R2, an expanded transcriptome atlas of over 109,000 genes, including lncRNAs, and demonstrates its utility in analyzing gene expression across normal and diseased human samples.

Genome Research · Jul 1, 2020Peer-reviewedGenomics