Author

Matthijs Simeon Berends

University Medical Center GroningenORCID 0000-0001-7620-1800Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Arjun Balmiki PrasadiD· 1 shared Bhanu N. M. SinhaiD· 1 shared Céline PulciniiD· 1 shared Christian F. LuziD· 1 shared Corinna GlasneriD· 1 shared Domnique L. ChaputiD· 1 shared Dorottya NagyiD· 1 shared Ebenezer Foster-NyarkoiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperMicrobiology

Arjun Balmiki PrasadORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 4, 2026

AMRgen: an R package for antimicrobial resistance genotype-phenotype analysis

Kathryn E. Holt, Silvia Argimón, Domnique L. Chaput…·Matthijs Simeon Berends

AMRgen is an R package that links antimicrobial resistance genotypes to phenotypes through data harmonization, analysis, and visualization, using surveillance data from priority pathogens.

DOI 10.64898/2026.05.01.722195

whole-genome sequencingstatistical model

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BioinformaticsJournal of Medical Internet ResearchPeer-reviewedMar 24, 2019

Development of an interactive open source software application (RadaR) for infection management / antimicrobial stewardship

Christian F. Luz, Matthijs Simeon Berends, Jan-Willem Hendrik Dik…·Bhanu N. M. Sinha

RadaR is an open-source software tool for analyzing infection management and antimicrobial stewardship data, enabling interactive and user-friendly analysis of large hospital datasets.

17 citations

electronic health recordsstatistical model

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