Stephen S.‐T. Yau

This paper introduces Primitive GLMY Homology to quantitatively analyze graph pangenomes and applies it to population genetic analysis in yeast.

This study applies a modified natural vector method to mitochondrial genome data from the 1000 Genomes Project to evaluate population genetic characteristics beyond pairwise comparisons.

This paper introduces ProCEDiS, a framework that generates representative protein conformations using neural surrogates and AlphaFold2, validated on four protein systems.

This paper introduces CAPE, a model that improves promoter strength prediction by incorporating evolutionary information, achieving state-of-the-art results and enabling in silico directed evolution.