Author

Mercedeh Javanbakht Movassagh

Dana-Farber Cancer InstituteORCID 0000-0001-7690-0230Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1

Frequent Co-Authors

Andrew David WeeksiD· 1 shared Anélia HorvathiD· 1 shared Brian Nsubuga KaayaiD· 1 shared Christine HehnlyiD· 1 shared David A. BrauniD· 1 shared Drucilla Jane RobertsiD· 1 shared Edith Mbabazi-KabacheloriD· 1 shared Elias KumbakumbaiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperGenomics

Andrew David WeeksORCID

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3 papers

Recent·Most cited

ImmunologybioRxivPreprintFeb 20, 2026

VDJdive and ECLIPSE enhance single-cell TCR sequencing analysis through the probabilistic resolution of ambiguous clonotypes

Ethan C Burns, Mercedeh Javanbakht Movassagh, Jill F. Lundell…·David A. Braun

VDJdive and ECLIPSE resolve ambiguous clonotypes in scTCR-seq by improving chain pairing and clone size estimation, enhancing clonal tracking across conditions.

DOI 10.64898/2026.02.18.706444

humanscRNA-seq

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BioinformaticsBMC GenomicsPeer-reviewedSep 22, 2021

SCReadCounts: Estimation of cell-level SNVs from scRNA-seq data

N. M. Prashant, Nawaf Alomran, Yu Chen…·Anélia Horvath

SCReadCounts estimates cell-level SNVs from scRNA-seq data, enabling mutation analysis and downstream applications in cancer and other studies.

29 citations

humanscRNA-seq

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Genomicsnpj Biofilms and MicrobiomesPeer-reviewedSep 10, 2021

Vaginal Microbiome Topic Modelling of Laboring Ugandan Women With and Without Fever

Mercedeh Javanbakht Movassagh, Lisa M. Bebell, Kathy L Burgoine…·Joseph Nathaniel Paulson

This study uses microbial topic modeling to identify associations between vaginal microbiome composition and intrapartum fever in Ugandan laboring women, improving prediction beyond clinical variables.

13 citations

humanmetagenomics

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