Joshua R. Korzenik

The study identifies oral microbial signatures associated with IBD and PSC and their potential translocation to the gut, supported by external validation.

This paper introduces VIP2B, a method to extract viral features from bulk metagenomes, showing that viral data improves disease diagnosis and reveals distinct gut virome community states.

The paper isolates bacteria from PSC patient bile and shows they induce inflammation and cell death in human cells.

PHILM, a deep learning framework, predicts phage-host interactions from metagenomic data with higher accuracy than traditional methods, identifying more interactions and capturing microbial succession patterns.

This paper maps intestinal glycans across development, diet, and inflammation in mice and humans, identifying dynamic changes and microbiome influences.