Author

Samuli Rounioja

Fimlab (Finland)ORCID 0000-0001-7713-0610Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:CITE-seq· 1 Research Focus:database / resource· 1 Research Focus:imputation· 1 Approach:transformer / foundation model· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Frederik KirkiD· 1 shared Konstantin IvanoviD· 1 shared Lars Rønn OlseniD· 1 shared Merja HeinäniemiiD· 1 shared Mouhamad Al Moussawy· 1 shared Olli LohiiD· 1 shared Signe ModvigiD· 1 shared Ville HautamäkiiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Frederik KirkORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJun 30, 2026

CyStainer: A transformer-based variational autoencoder for robust marker imputation in high-parameter cytometry

Konstantin Ivanov, Mouhamad Al Moussawy, Frederik Kirk…·Merja Heinäniemi

CyStainer imputes markers in high-parameter cytometry data without shared markers, outperforming existing methods in panel merging and dataset integration.

DOI 10.64898/2026.06.30.735235

CITE-seqbulk RNA-seq

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