Author
Children's Hospital of PhiladelphiaORCID 0000-0001-7831-3996Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Deanne M. Taylor, Aditya M. Lahiri, Benjamin J. Stear…·Jonathan C. Silverstein
ddkg.skill translates biomedical questions into Cypher queries for the DDKG, improving accuracy through structured references and validation.
Taha Mohseni Ahooyi, Benjamin J. Stear, Yuanchao Zhang…·Deanne M. Taylor
MOSAIC learns graph node embeddings by analyzing dominant spectral components of diffusion operators, outperforming existing methods in biomedical graph tasks.
Deanne M. Taylor, Taha Mohseni Ahooyi, Benjamin J. Stear…·Jonathan C. Silverstein
The paper introduces BIFO, an ontology that specifies biologically admissible directed transformations in biomedical knowledge graphs to enable meaningful signal propagation.
Zhuangzhuang Geng, Eric K. Wafula, Ryan J. Corbett…·Jo Lynne Rokita
The paper introduces OpenPedCan, a harmonized multi-omic dataset of pediatric cancer patients, providing integrated genomic, transcriptomic, and proteomic data for research and clinical applications.
Zhe Zhang, Yuanchao Zhang, Perry Evans…·Deanne M. Taylor
RNA-Seq 2G provides a web portal with 25 differential expression methods for RNA-seq data, showing that data distribution assumptions significantly affect results.