Author

Arti Kapil

All India Institute of Medical SciencesORCID 0000-0001-7834-2754Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Organism:human· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Assaf RokneyiD· 2 shared Ayorinde O. AfolayaniD· 2 shared Danielle J. IngleiD· 2 shared David A. RaskoiD· 2 shared Iruka N. OkekeiD· 2 shared Jacqueline A. KeaneiD· 2 shared Jobin John JacobiD· 2 shared John A. CrumpiD· 2 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Assaf RokneyORCID

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3 papers

Recent·Most cited

MicrobiologyGenome MedicinePeer-reviewedOct 24, 2025

✦ In-depth digest

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Danielle J. Ingle, Jane Hawkey, Martin Hunt…·Kathryn E. Holt

Mykrobe k-mer panel genotypes Salmonella Typhi lineages, antimicrobial resistance (AMR) markers and plasmids from Illumina or nanopore reads, matching mapping-based lineage calls for 99.8% of genomes.

12 citationstop 5%

bacteria (other)human

𝕏 PostBluesky

MicrobiologyGenome MedicinePeer-reviewedMay 9, 2025

The TyphiNET data visualisation dashboard: Unlocking Salmonella Typhi genomics data to support public health

Zoe A. Dyson, Louise Cerdeira, Vandana Sharma…·Jackie Wright

The paper introduces TyphiNET, a dashboard for exploring Typhi genomics data to support public health decisions on antimicrobial resistance and vaccine implementation.

13 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsPLoS PathogensPeer-reviewedApr 28, 2023

Genomic analysis unveils the role of genome degradation events and gene flux in the emergence and persistence of S. Paratyphi A lineages

Jobin John Jacob, Agila Kumari Pragasam, Karthick Vasudevan…·Ankur Mutreja

The paper analyzes S. Paratyphi A isolates to show genome degradation and gene flux drive lineage evolution, with implications for public health surveillance.

4 citations

humanwhole-genome sequencing

𝕏 PostBluesky