Simone E. Muenst

This paper introduces a method for high-plex protein imaging using MALDI-IHC with PCMT-labeled antibodies and presents an open-source analysis pipeline called gutenTAG.

scROSHI identifies cell types without training data by using pre-existing gene sets and hierarchical relationships, outperforming methods in low-data and high-diversity scenarios.

SCIM matches single-cell measurements across technologies by learning a technology-invariant latent space and applying bipartite matching, achieving high accuracy in real-world datasets.